MediaScan exampleΒΆ

[2]:
import cobra
from cobra.flux_analysis.parsimonious import pfba
import cobrakbase
import sys
sys.path.append("/Users/chenry/code/ModelSEEDpy")
from modelseedpy import KBaseMediaPkg

[6]:
kbase_api = cobrakbase.KBaseAPI()
#Getting B. theta model out of KBase
model = kbase_api.get_from_ws("E_iML1515.kb",40576)
#Creating KBase media package for assigning constraints based on media
kmp = KBaseMediaPkg(model)
#Getting list of all media in KBase
media_list = kbase_api.list_objects("KBaseMedia")
print("Media\tGrowth")
for media_info in media_list:
    #Getting media object data
    media = kbase_api.get_from_ws(media_info[1],media_info[6])
    #Constraining model based on media
    kmp.build_package(media)
    #Optimizing model
    solution=model.optimize()
    #Printing predicted growth rate in media
    print(media_info[1]+"\t"+str(solution.objective_value))
Media   Growth

Sulfate-L-Arabitol      0.0
Sulfate-Cystathionine   0.0
Sulfate-N-Acetyl-D-galactosamine        0.0
Sulfate-Uridine 0.0
Phosphate-Cytidine-2-Monophosphate      0.0
Nitrogen-L-Pyroglutamic-Acid    0.0
Sulfate-L-Lysine        0.0
Sulfate-D-Arabitol      0.0
Carbon-L-Malic-Acid     0.0
Carbon-D-Psicose        0.0
Carbon-N-Acetyl-L-Glutamic-Acid 0.0
Nitrogen-Nitrite        0.0
Nitrogen-Xanthine       0.0
Sulfate-Tyramine        0.0
Carbon-Mucic-Acid       0.0
Sulfate-Citrate 0.0
Sulfate-Maltotriose     0.0
Sulfate-1H-Imidazole-4-ethanamin        0.0
Nitrogen-L-Glutamine    0.0
Sulfate-Glycerone       0.0
Nitrogen-b-Phenylethylamine     0.0
Sulfate-Cysteamine      0.0
Sulfate-6-Deoxy-D-galactose     0.0
Carbon-D-Gluconic-Acid  0.0
Nitrogen-L-Proline      0.0
Nitrogen-Glycine        0.0
Nitrogen-Nitrate        0.0
Sulfate-Dextrin 0.0
Carbon-L-Asparagine     0.0
Phosphate-D-2-Phospho-Glyceric-Acid     0.0
Carbon-Tyramine 0.0
Sulfate-NH3     0.0
Sulfate-Galactitol      0.0
Complete        0.0
Nitrogen-L-Asparagine   0.0
Sulfate-Biuret  0.0
Sulfate-L-Histidine     0.0
Sulfate-D-Alanine       0.0
Nitrogen-L-Tyrosine     0.0
Nitrogen-Ala-Asp        0.0
Carbon-d-Amino-Valeric-Acid     0.0
Sulfate-L-Isoleucine    0.0
Sulfate-R-R-Tartaric-Acid       0.0
Sulfate-L-Valine        0.0
Nitrogen-Inosine        0.0
Carbon-Citric-Acid      0.0
Carbon-2-3-Butanone     0.0
Sulfate-L-Rhamnose      0.0
Sulfate-Xylitol 0.0
Carbon-D-Fructose-6-Phosphate   0.0
Sulfate-Amygdalin       0.0
Phosphate-D-Mannose-6-Phosphate 0.0
Carbon-Glycyl-L-Proline 0.0
Carbon-Quinic-Acid      0.0
Carbon-Salicin  0.0
Carbon-Acetic-Acid      0.0
Carbon-D-Mannose        0.0
Sulfate-Acetamide       0.0
Sulfate-Lanthionine     0.0
Carbon-m-Tartaric-Acid  0.0
Biolog-C-lac-N-dna-P-dna        0.0
Phosphate-O-Phospho-D-Tyrosine  0.0
Nitrogen-Ethylamine     0.0
Sulfate-Quinate 0.0
Sulfate-Stachyose       0.0
Nitrogen-Cytidine       0.0
Sulfate-L-Proline       0.0
Sulfate-p-Amino-Benzene-Sulfonic-Acid   0.0
Carbon-Oxalic-Acid      0.0
Carbon-Tween-80 0.0
Nitrogen-L-Aspartic-Acid        0.0
7H9     0.0
Phosphate-O-Phospho-L-Threonine 0.0
Carbon-D-Saccharic-Acid 0.0
Carbon-D-Glucosamine    0.0
Carbon-D-Arabitol       0.0
Carbon-g-Hydroxy-Butyric-Acid   0.0
Carbon-D-Fucose 0.0
Phosphate-Uridine-2-Monophosphate       0.0
MinimalGrowthNMS        0.0
Carbon-p-Hydroxy-Phenylacetic-Acid      0.0
Sulfate-L-alanylglycine 0.0
Carbon-L-Glutamine      0.0
Carbon-Uridine  0.0
Sulfate-L-Ornithine     0.0
Carbon-D-L-Octopamine   0.0
Nitrogen-D-Glutamic-Acid        0.0
Carbon-Glycyl-L-Glutamic-Acid   0.0
Biolog-C-ser-l-N-ser-l  0.0
LB      0.0
Phosphate-Phosphono-Acetic-Acid 0.0
Carbon-Thymidine        0.0
Carbon-2-3-Butanediol   0.0
Sulfate-D-Glucarate     0.0
Sulfate-D-Mannosamine   0.0
Nitrogen-Acetamide      0.0
Carbon-b-Methyl-D-Glucoside     0.0
Carbon-4-Hydroxy-L-Proline-trans        0.0
Carbon-Xylitol  0.0
Nitrogen-Ala-Glu        0.0
Nitrogen-N-Acetyl-D-Mannosamine 0.0
Nitrogen-Adenosine      0.0
Carbon-Citraconic-Acid  0.0
Carbon-Dextrin  0.0
Nitrogen-L-Valine       0.0
Nitrogen-Uracil 0.0
Carbon-a-Keto-Glutaric-Acid     0.0
Sulfate-Acetoin 0.0
Sulfate-Thymine 0.0
Phosphate-Uridine-5-Monophosphate       0.0
Nitrogen-L-Isoleucine   0.0
Nitrogen-Ala-Leu        0.0
Carbon-Adenosine        0.0
Sulfate-L-Djenkolic-Acid        0.0
Sulfate-D-Aspartate     0.0
Phosphate-Guanosine-5-Monophosphate     0.0
Carbon-a-Hydroxy-Butyric-Acid   0.0
Phosphate-D-Glucose-6-Phosphate 0.0
Carbon-L-Arabitol       0.0
Phosphate-Cytidine-2-3-Cyclic-Monophosphate     0.0
Carbon-D-Cellobiose     0.0
Sulfate-L-Phenylalanine 0.0
Nitrogen-L-Alanine      0.0
Sulfate-Cytidine        0.0
Carbon-L-Leucine        0.0
Carbon-D-Xylose 0.0
Sulfate-Pyruvate        0.0
Nitrogen-Urea   0.0
Phosphate-6-Phospho-Gluconic-Acid       0.0
Carbon-Itaconic-Acid    0.0
Phosphate-D-Mannose-1-Phosphate 0.0
Nitrogen-L-Cysteine     0.0
Biolog-C-ile-l-N-ile-l  0.0
MR1Aerobic      0.0
Sulfate-L-Cysteine-Sulfinic-Acid        0.0
Carbon-Fumaric-Acid     0.0
Sulfate-L-Sorbose       0.0
Carbon-D-Glucose-Palsson        0.0
Carbon-L-Tartaric-Acid  0.0
Carbon-b-Methyl-D-Galactoside   0.0
Carbon-Gelatin  0.0
ArgonneNMSMedia 0.0
Carbon-D-Serine 0.0
Nitrogen-g-Amino-N-Butyric-Acid 0.0
Sulfate-L-Methionine-Sulfoxide  0.0
Carbon-L-Arabinose      0.0
Biolog-C-acgam-N--acgam 0.0
Phosphate-Trimetaphosphate      0.0
Sulfate-Thiosulfate     0.0
Sulfate-N-Acetylneuraminate     0.0
Sulfate-Formate 0.0
Phosphate-Phospho-Glycolic-Acid 0.0
Nitrogen-D-Lysine       0.0
Carbon-L-Lyxose 0.0
Nitrogen-N-Acetyl-D-Glucosamine 0.0
Nitrogen-Thymidine      0.0
Carbon-L-Histidine      0.0
Carbon-Glycyl-L-Aspartic-Acid   0.0
Biolog-C-lac-N-ala-l    0.0
Carbon-a-Methyl-D-Galactoside   0.0
Sulfate-D-Arabinose     0.0
Sulfate-L-Serine        0.0
Sulfate-L-Arginine      0.0
Carbon-D-Aspartic-Acid  0.0
Nitrogen-N-Acetyl-D-Galactosamine       0.0
Phosphate-Uridine-3-Monophosphate       0.0
Sulfate-L-Aspartate     0.0
Nitrogen-D-Asparagine   0.0
Nitrogen-L-Citrulline   0.0
Phosphate-Adenosine-5-Monophosphate     0.0
Carbon-D-Tagatose       0.0
Sulfate-Glycogen        0.0
Biolog-C-lac-N-ptrc     0.0
Carbon-L-Phenylalanine  0.0
Sulfate-Palatinose      0.0
Nitrogen-D-Valine       0.0
Carbon-g-Amino-Butyric-Acid     0.0
Nitrogen-Guanine        0.0
Sulfate-Butane-Sulfonic-Acid    0.0
Nitrogen-D-Alanine      0.0
Carbon-L-Lactic-Acid    0.0
NoBounds        0.0
Nitrogen-D-Serine       0.0
Carbon-L-Arginine       0.0
Phosphate-Adenosine-2-Monophosphate     0.0
Carbon-Maltotriose      0.0
MR1Anaerobic    0.0
Sulfate-Ethanolamine    0.0
Phosphate-Guanosine-3-Monophosphate     0.0
Biolog-C-cytd-N-cytd    0.0
Carbon-a-Keto-Butyric-Acid      0.0
Sulfate-Inosine 0.0
Phosphate-Phosphoenol-Pyruvate  0.0
Nitrogen-Ala-Gly        0.0
Sulfate-Methane-Sulfonic-Acid   0.0
Nitrogen-L-Ornithine    0.0
Sulfate-Gly-Gln 0.0
Carbon-Arbutin  0.0
Carbon-1-2-Propanediol  0.0
Sulfate-Propanoate      0.0
Biolog-C-lac-N-thr-l    0.0
Carbon-D-L-Citramalic-Acid      0.0
Sulfate-D-Tagatose      0.0
Sulfate-L-Citrulline    0.0
Carbon-L-Homoserine     0.0
Carbon-2-Hydroxy-Benzoic-Acid   0.0
SP4     0.0
Sulfate-Ethylamine      0.0
Sulfate-Salicin 0.0
Phosphate-2-Deoxy-D-Glucose-6-Phosphate 0.0
Carbon-Putrescine       0.0
Carbon-D-Threonine      0.0
Carbon-Pectin   0.0
MethanogenMedia 0.0
Carbon-Gentiobiose      0.0
Sulfate-D-Cysteine      0.0
Biolog-C-dna-N-dna-P-dna        0.0
Carbon-a-D-Glucose      0.0
Carbon-Oxalomalic-Acid  0.0
Carbon-b-Hydroxy-Butyric-Acid   0.0
Nitrogen-Met-Ala        0.0
Biolog-C-lac-N-asp-l    0.0
Carbon-Amygdalin        0.0
Carbon-D-Tartaric-Acid  0.0
Sulfate-Pectin  0.0
Nitrogen-L-Homoserine   0.0
Carbon-L-Ornithine      0.0
Carbon-Chondroitin      0.0
Carbon-tricarballylate  0.0
Sulfate-Thymidine       0.0
Phosphate-O-Phospho-L-Serine    0.0
Sulfate-L-Methionine    0.0
Sulfate-D-Galactose     0.0
Phosphate-Adenosine-2-3-Cyclic-Monophosphate    0.0
Sulfate-Xanthosine      0.0
Sulfate-D-Psicose       0.0
Carbon-L-Rhamnose       0.0
Nitrogen-Uric-Acid      0.0
Biolog-C-lac-N-met-l    0.0
Sulfate-D-Glucuronate   0.0
Carbon-L-Alanine        0.0
Nitrogen-Tyramine       0.0
Carbon-b-Phenylethylamine       0.0
Phosphate-Phosphate     0.0
Nitrogen-Ethanolamine   0.0
Carbon-N-Acetyl-D-Glucosamine   0.0
Sulfate-L-Glutamate     0.0
Biolog-C-lac-N-glu-l    0.0
Sulfate-Glutathione     0.0
Sulfate-D-Galactosamine 0.0
Sulfate-D-L-Lipoamide   0.0
Carbon-Butylamine-sec   0.0
NMS     0.0
Nitrogen-N-Acetyl-D-L-Glutamic-Acid     0.0
Sulfate-6-Deoxy-L-galactose     0.0
Sulfate-Tween-20        0.0
Sulfate-N-Acetyl-D-L-Methionine 0.0
Biolog-C-lac-N-ile-l    0.0
Sulfate-Ribitol 0.0
Nitrogen-Uridine        0.0
Sulfate-D-Fructose      0.0
Carbon-L-Aspartic-Acid  0.0
Sulfate-L-Alanine       0.0
Carbon-L-Glutamic-Acid  0.0
Sulfate-L-Cystine       0.0
MinimalGrowthNoMedia    0.0
ArgonneLBMedia  0.0
Nitrogen-D-Galactosamine        0.0
PlantAutotrophicMedia   0.0
Biolog-C-dna    0.0
Sulfate-Sucrose 0.0
Carbon-b-D-Allose       0.0
Nitrogen-L-Lysine       0.0
Nitrogen-Gly-Gln        0.0
Sulfate-Ala-His 0.0
Nitrogen-L-Glutamic-Acid        0.0
Carbon-Mannan   0.0
PlantHeterotrophicMedia 0.0
Sulfate-L-Arabinose     0.0
Sulfate-Gentiobiose     0.0
Carbon-D-Malic-Acid     0.0
Carbon-Maltose  0.0
Carbon-Sucrose  0.0
Sulfate-Taurine 0.0
Sulfate-Arbutin 0.0
Carbon-N-Acetyl-D-Galactosamine 0.0
Sulfate-Uracil  0.0
Sulfate-Propane-1-2-diol        0.0
Biolog-C-lac-N-acgam    0.0
Carbon-D-Melezitose     0.0
Sulfate-D-Ribose        0.0
Carbon-D-Ribose 0.0
Nitrogen-L-Methionine   0.0
Phosphate-Tripolyphosphate      0.0
Sulfate-D-Asparagine    0.0
Sulfate-2-Hydroxyethane-Sulfonic-Acid   0.0
Carbon-L-Alanyl-Glycine 0.0
Nitrogen-Histamine      0.0
Biolog-C-lac-N-adn      0.0
Sulfate-Guanosine       0.0
Carbon-D-Glucose-1-Phosphate    0.0
Sulfate-tricarballylate 0.0
Phosphate-Cytidine-3-Monophosphate      0.0
Nitrogen-D-Glucosamine  0.0
Sulfate-D-Methionine    0.0
Carbon-D-Lactitol       0.0
Biolog-C-lac-S-cys-l    0.0
Carbon-sorbate  0.0
Sulfate-N-Acetyl-D-glucosamine  0.0
Carbon-a-Methyl-D-Glucoside     0.0
Phosphate-2-Aminoethyl-Phosphonic-Acid  0.0
Sulfate-Galactarate     0.0
Carbon-L-Pyroglutamic-Acid      0.0
Phosphate-b-Glycerol-Phosphate  0.0
Sulfate-Glycerol        0.0
Sulfate-Acetate 0.0
Sulfate-Ala-Gln 0.0
Carbon-D-Mannitol       0.0
Phosphate-O-Phospho-D-Serine    0.0
Carbon-D-L-Carnitine    0.0
Sulfate-D-Xylose        0.0
Sulfate-Cytosine        0.0
Carbon-L-Threonine      0.0
Sulfate-Maltose 0.0
Phosphate-D-3-Phospho-Glyceric-Acid     0.0
Carbon-N-Acetyl-b-D-Mannosamine 0.0
Sulfate-Adenine 0.0
Biolog-C-lac-N-his-l    0.0
Carbon-D-Melibiose      0.0
Sulfate-4-Hydroxybenzoate       0.0
Biolog-C-lac-N-gly      0.0
Carbon-Capric-Acid      0.0
Sulfate-Butanoic-Acid   0.0
Sulfate-D-Sorbitol      0.0
Sulfate-Deoxyribose     0.0
Nitrogen-D-L-a-Amino-N-Butyric-Acid     0.0
Carbon-Glycogen 0.0
Sulfate-Gelatine        0.0
Sulfate-L-Cysteinyl-Glycine     0.0
Biolog-C-lac-N-phe-l    0.0
Biolog-C-gln-l-N-gln-l  0.0
Nitrogen-D-Aspartic-Acid        0.0
Sulfate-Putrescine      0.0
Phosphate-Guanosine-3-5-Cyclic-Monophosphate    0.0
Phosphate-Pyrophosphate 0.0
Sulfate-L-Cysteic-Acid  0.0
Sulfate-Nitrite 0.0
Nitrogen-Biuret 0.0
Sulfate-D-Mannose       0.0
Sulfate-L-Glutamine     0.0
Nitrogen-Gly-Glu        0.0
Sulfate-Sulfate 0.0
Nitrogen-Ala-His        0.0
Carbon-D-Glucosaminic-Acid      0.0
Nitrogen-Gly-Asn        0.0
Sulfate-Tetrathionate   0.0
Nitrogen-Formamide      0.0
Nitrogen-Allantoin      0.0
Carbon-L-Proline        0.0
Biolog-C-cytd   0.0
Carbon-D-Glucose-6-Phosphate    0.0
Phosphate-D-Glucose-1-Phosphate 0.0
Carbon-D-L-a-Glycerol-Phosphate 0.0
Nitrogen-L-Threonine    0.0
Sulfate-N-Acetyl-D-mannosamine  0.0
Carbon-L-Xylose 0.0
Carbon-Palatinose       0.0
Carbon-3-Hydroxy-2-Butanone     0.0
Biolog-C-lac-N-dna      0.0
Carbon-Urocanic-Acid    0.0
Carbon-Butyric-Acid     0.0
Sulfate-L-Lyxose        0.0
Carbon-Caproic-Acid     0.0
Phosphate-Cytidine-5-Monophosphate      0.0
Nitrogen-L-Phenylalanine        0.0
Phosphate-Carbamyl-Phosphate    0.0
Carbon-Dihydroxy-Acetone        0.0
Carbon-D-Galacturonic-Acid      0.0
Nitrogen-Ammonia        0.0
Carbon-Pyruvic-Acid     0.0
Carbon-Stachyose        0.0
Nitrogen-L-Arginine     0.0
Biolog-C-lac-S-gthrd    0.0
Carbon-D-Alanine        0.0
Carbon-D-L-Malic-Acid   0.0
Sulfate-2-Amino-2-deoxy-D-glucon        0.0
Carbon-D-Galactonic-Acid-g-Lactone      0.0
Carbon-Glyoxylic-Acid   0.0
Sulfate-Carbon  0.0
Carbon-D-Raffinose      0.0
Sulfate-Mannan  0.0
Sulfate-Ala-Leu 0.0
Biolog-C-dna-P-dna      0.0
Carbon-Glycolic-Acid    0.0
Carbon-Formic-Acid      0.0
Sulfate-Methylamine     0.0
Sulfate-Xanthine        0.0
Biolog-C-lac-N-pro-l    0.0
Carbon-2-Deoxy-Adenosine        0.0
Nitrogen-L-Tryptophan   0.0
Sulfate-Succinate       0.0
Sulfate-Gly-Met 0.0
Carbon-Dulcitol 0.0
Carbon-a-D-Lactose      0.0
Sulfate-Laminarin       0.0
Carbon-L-Lysine 0.0
Nitrogen-Hydroxylamine  0.0
Sulfate-Taurocholic-Acid        0.0
Sulfate-S-Lactate       0.0
Phosphate-Guanosine-2-3-Cyclic-Monophosphate    0.0
Nitrogen-Guanosine      0.0
Sulfate-Oxalate 0.0
Sulfate-Malonate        0.0
Sulfate-D-Serine        0.0
Nitrogen-L-Leucine      0.0
Sulfate-Adenosine       0.0
Biolog-C-lac-N-ser-l    0.0
Sulfate-Tween-80        0.0
Carbon-D-Fructose       0.0
Nitrogen-Ala-Thr        0.0
Biolog-C-lac-N-arg-l    0.0
Carbon-4-Hydroxy-Benzoic-Acid   0.0
Carbon-Laminarin        0.0
Carbon-L-Isoleucine     0.0
Carbon-N-Acetyl-Neuraminic-Acid 0.0
Empty   0.0
Carbon-L-Methionine     0.0
Phosphate-Phosphocreatine       0.0
Carbon-D-Galactose      0.0
Sulfate-Urea    0.0
Biolog-C-lac-N-leu-l    0.0
Sulfate-sorbate 0.0
Sulfate-Allantoin       0.0
Carbon-a-Keto-Valeric-Acid      0.0
Carbon-L-Fucose 0.0
Sulfate-Hypotaurine     0.0
Nitrogen-Cytosine       0.0
Sulfate-L-Cysteine      0.0
Nitrogen-Putrescine     0.0
Nitrogen-L-Serine       0.0
Carbon-i-Erythritol     0.0
Biolog-C-lac-N-asn-l    0.0
Carbon-m-Inositol       0.0
Sulfate-Sebacic-acid    0.0
Phosphate-Thymidine-5-Monophosphate     0.0
Sulfate-L-Asparagine    0.0
Carbon-Propionic-Acid   0.0
Sulfate-D-Valine        0.0
Carbon-2-Deoxy-D-Ribose 0.0
Phosphate-O-Phosphoryl-Ethanolamine     0.0
Carbon-Lactulose        0.0
Nitrogen-D-Mannosamine  0.0
Carbon-Succinic-Acid    0.0
Sulfate-D-Lysine        0.0
Sulfate-L-Leucine       0.0
Biolog-C-lac-N-gln-l    0.0
Sulfate-S-Malate        0.0
Sulfate-2-Methylmaleate 0.0
Sulfate-Glyoxylate      0.0
Sulfate-b-Methyl-D-Glucoside    0.0
Carbon-Inosine  0.0
Nitrogen-Ala-Gln        0.0
Phosphate-Phosphoryl-Choline    0.0
Carbon-Sebacic-Acid     0.0
Carbon-D-Arabinose      0.0
Sulfate-N-Acetyl-L-glutamate    0.0
Nitrogen-e-Amino-N-Caproic-Acid 0.0
Biolog-C-lac-S-tsul     0.0
Nitrogen-Adenine        0.0
Carbon-D-Glucuronic-Acid        0.0
Carbon-Chondroitin-Sulfate-C    0.0
Carbon-D-Glucose        0.0
Carbon-L-Serine 0.0
Phosphate-Adenosine-3-Monophosphate     0.0
Sulfate-Mannitol        0.0
Nitrogen-L-Histidine    0.0
Phosphate-Uridine-2-3-Cyclic-Monophosphate      0.0
Phosphate-Phospho-L-Arginine    0.0
Biolog-C-lac-S-so3      0.0
Nitrogen-Gly-Met        0.0
Sulfate-Thiourea        0.0
Nitrogen-Methylamine    0.0
Sulfate-L-Homoserine    0.0
Carbon-Malonic-Acid     0.0
Carbon-Adonitol 0.0
Carbon-Inulin   0.0
Carbon-L-Valine 0.0
Carbon-D-Sorbitol       0.0
Carbon-Tween-20 0.0
Phosphate-O-Phospho-L-Tyrosine  0.0
Nitrogen-Xanthosine     0.0
Carbon-Ethanolamine     0.0
Sulfate-Fumarate        0.0
Sulfate-2-1-beta-D-Fructosyl-n  0.0
Sulfate-L-Threonine     0.0
Sulfate-D-Glucose-6-phosphate   0.0
Carbon-Glycine  0.0
Sulfate-Nitrate 0.0
Carbon-L-Sorbose        0.0
Carbon-Acetamide        0.0
Carbon-Glycerol 0.0
Sulfate-D-Galacturonate 0.0
Sulfate-Itaconate       0.0
Nitrogen-Thymine        0.0
Phosphate-Cytidine-3-5-Cyclic-Monophosphate     0.0
Sulfate-L-Tyrosine      0.0
Sulfate-N-Acetyl-L-Cysteine     0.0
Phosphate-D-L-a-Glycerol-Phosphate      0.0
Sulfate-Glycine 0.0
Nitrogen-d-Amino-N-Valeric-Acid 0.0
Sulfate-D-Glucosamine   0.0
Sulfate-5-Oxoproline    0.0
Phosphate-D-Glucosamine-6-Phosphate     0.0
Biolog-C-thr-l-N-thr-l  0.0
Carbon-Acetoacetic-Acid 0.0
Sulfate-L-Tryptophan    0.0
Sulfate-Formamide       0.0
Nitrogen-Agmatine       0.0
Sulfate-D-L-Ethionine   0.0
Biolog-C-glu-l-N-glu-l  0.0
Carbon-D-Trehalose      0.0
BU12_10 0.0
BU7_LacPrx      0.0
C-acetate       0.0
C-Citrate       0.0
C-D-Glucose     0.0
fdx2_ActOxl_t2  0.0
LB_4C_24h       0.0
C-D-Lactate     0.0
RefGlucoseMinimal       0.0