{
 "cells": [
  {
   "cell_type": "markdown",
   "id": "767b3708-3165-41af-829b-cd59916f024c",
   "metadata": {},
   "source": [
    "# Escher Map"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "id": "bce239f7-e14a-44d3-a7d1-5af668db05c4",
   "metadata": {},
   "outputs": [],
   "source": [
    "import json\n",
    "import modelseedpy_escher\n",
    "import modelseedpy_escher.io"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "c16f029e-2adc-4fcf-aec3-bfc79ddfaaa6",
   "metadata": {},
   "outputs": [],
   "source": [
    "em_data = None\n",
    "with open('/home/fliu/workspace/data/sbml/iAnC892/iAnC892_mapped.core.json', 'r') as fh:\n",
    "    em_data = json.load(fh)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "1a5f01d6-5b83-46e9-b719-a331b4d7d194",
   "metadata": {},
   "outputs": [],
   "source": [
    "em = modelseed_escher.core.EscherMap(em_data)\n",
    "cpd_remap = {}\n",
    "rxn_remap = {}\n",
    "for o in em_data[1]['nodes']:\n",
    "    n = em_data[1]['nodes'][o]\n",
    "    if n['node_type'] == 'metabolite':\n",
    "        cpd_remap[n['bigg_id']] = n['bigg_id'] + '1'\n",
    "for o in em_data[1]['reactions']:\n",
    "    n = em_data[1]['reactions'][o]\n",
    "    rxn_remap[n['bigg_id']] = n['bigg_id'] + '1'\n",
    "em.swap_ids(cpd_remap, rxn_remap)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "57c4eadb-4388-4202-a551-89ae4d1aab00",
   "metadata": {},
   "outputs": [],
   "source": [
    "with open('/home/fliu/workspace/data/sbml/iAnC892/iAnC892_mapped.core_1.json', 'w') as fh:\n",
    "    fh.write(json.dumps(em_data))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "4e7b0ce7-d85b-4478-ab49-8e1a91d063d8",
   "metadata": {},
   "outputs": [],
   "source": [
    "em1 = modelseedpy_escher.io.load_json_map('/home/fliu/workspace/data/sbml/iAnC892/iAnC892_mapped.core_0.json')\n",
    "em2 = modelseedpy_escher.io.load_json_map('/home/fliu/workspace/data/sbml/iAnC892/iAnC892_mapped.core_1.json')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "id": "843bd680-a9a4-45f8-9474-c212a017d641",
   "metadata": {},
   "outputs": [],
   "source": [
    "grid = modelseedpy_escher.EscherGrid()\n",
    "master = grid.build([em1, em2], (2, 1))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "id": "5990b447-b6d4-4268-9540-391b39c318f6",
   "metadata": {},
   "outputs": [],
   "source": [
    "with open('/home/fliu/workspace/data/sbml/iAnC892/iAnC892_mapped.core_1_0.json', 'w') as fh:\n",
    "    fh.write(json.dumps(master.escher_data))"
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3 (ipykernel)",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.9.12"
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 "nbformat": 4,
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